Neural Transport Nested Sampling (NTNS) is a new sampling algorithm that merges nested sampling with neural flow-based methods to sample from Boltzmann distributions of molecular systems. It employs a flow-matching velocity as the drift in a Metropolis–Hastings corrected Langevin kernel within a nested sampling loop, requiring only target energy evaluations and enabling scalable estimation of the full partition function for high-dimensional particle systems. Benchmarks on Lennard–Jones clusters up to 55 particles show NTNS reduces interatomic distance and energy Wasserstein errors by more than an order of magnitude compared to leading neural baselines, while also providing a calibrated, temperature-resolved partition function estimate that captures phase structure from a single run.
By David Yallup, Will Handley
arXiv:2607. 04738v1 Announce Type: cross Abstract: Reconstructing population dynamics is a central problem in the physical and data sciences.
By Markus Heinonen, Yair Shenfeld, Ricardo Baptista, Daniel Waxman, Dmitry Batenkov, Tim Cooijmans, Eli Bingham
arXiv:2605. 31498v2 Announce Type: replace Abstract: A long standing challenge in computational chemistry and biophysics is efficiently sampling the Boltzmann distribution of molecules.
By Daniel Pe\~naherrera, Rishal Aggarwal, David Ryan Koes
Reconstructing population dynamics is a central problem in the physical and data sciences. Often, the dynamics are modeled as a Wasserstein gradient flow (WGF): a curve of distributions driven by an energy functional.
arXiv:2601. 08527v3 Announce Type: replace-cross Abstract: We propose a novel method for sampling from unnormalized Boltzmann densities based on a probability flow ordinary differential equation (ODE) derived from linear stochastic interpolants.
By Chenguang Duan, Yuling Jiao, Gabriele Steidl, Christian Wald, Jerry Zhijian Yang, Ruizhe Zhang
arXiv:2407.05790v4 Announce Type: replace-cross
Abstract: This paper introduces and analyses interacting underdamped Langevin algorithms, termed Kinetic Interacting Particle Langevin Monte Carlo (KIP...
By Paul Felix Valsecchi Oliva, O. Deniz Akyildiz
arXiv:2610.10278v1 Announce Type: cross
Abstract: We propose a neural algorithm for sampling from distributions specified by unnormalized Boltzmann densities. Our approach is based on the Jordan--Kin...
By Chenguang Duan, Johannes Hertrich, Gabriele Steidl
The paper presents a new one‑step generative modeling framework for finite state spaces, leveraging discrete Wasserstein geometry to define a target‑relative KL gradient flow over a reversible Markov kernel. The authors implement this flow at the particle level using Markov jumps and encode the resulting transport updates into a latent‑conditioned generator, enabling one‑step inference after training. Experiments on a controlled setting confirm KL dissipation, consistency between particle dynamics and probability flow, and accurate numerical scaling, while a finite‑capacity neural generator successfully tracks the exact transport targets.
By Alessandro Micheli, Andrea Zerio, Samir Bhatt
arXiv:2601. 21026v2 Announce Type: replace-cross Abstract: Sampling configurations at thermodynamic equilibrium is a central challenge in statistical physics.
By Louis Grenioux, Maxence Noble
arXiv:2512. 08022v2 Announce Type: replace-cross Abstract: We propose a novel diffusion-based posterior sampling method within a plug-and-play framework.
By Jinyuan Chang, Chenguang Duan, Yuling Jiao, Ruoxuan Li, Jerry Zhijian Yang, Cheng Yuan
arXiv:2607. 27077v1 Announce Type: new Abstract: Energy-Based Models (EBMs) provide an interpretable framework for generative modeling of scientific data, but poor Markov Chain Monte Carlo mixing often limits their reliability.
By Nicolas B\'ereux, Aur\'elien Decelle, Cyril Furtlehner, Beatriz Seoane
The paper introduces the Energy-based Feynman-Kac Corrector (EBFKC), a method that improves inference-time scaling for diffusion models that are imperfect due to data and training limitations. EBFKC derives Feynman-Kac dynamics to exactly track a prescribed path in continuous time, then approximates these dynamics with sequential Monte Carlo and variance‑controlling guidance. Experiments on Gaussian mixtures, particle systems, and molecular simulations demonstrate that EBFKC closely matches target distributions and free‑energy profiles, outperforming standard inference‑time scaling baselines that still exhibit significant sampling errors.
By Zuokai Wen, Louis Grenioux, Weinan E, Jiequn Han