arXiv AI

Enhancing Transformer-based Routing by Encoding Distance via Relative Positional Encoding

arXiv:2607. 18909v1 Announce Type: new Abstract: This paper explores Relative Positional Encoding (RPE) as an additive bias in Transformer architectures to solve the Team Orienteering Problem.

arXiv Machine Learning
Oct 16

Size-Transferability of Graph Transformers with Convolutional Positional Encodings

The paper investigates Graph Transformers (GTs) that use Graph Neural Network (GNN)-based positional encodings. By analyzing GTs through manifold limit models, the authors establish a theoretical link between GTs and Manifold Neural Networks (MNNs), showing that GTs inherit transferability guarantees from their positional encodings. Experiments on standard graph benchmarks confirm that GTs scale comparably to GNNs, and a real‑world shortest‑path estimation task demonstrates their practical efficiency on large terrains.

By Javier Porras-Valenzuela, Zhiyang Wang, Teresa Shang, Yusu Wang, Alejandro Ribeiro
arXiv AI
Jun 26

Rotary Position Encodings for Graphs

arXiv:2509. 22259v4 Announce Type: replace-cross Abstract: We study the extent to which rotary position encodings (RoPE), a recent transformer position encoding algorithm broadly adopted in large language models (LLMs) and vision transformers (ViTs), can be applied to graph-structured data.

By Isaac Reid, Arijit Sehanobish, Cederik H\"ofs, Bruno Mlodozeniec, Leonhard Vulpius, Federico Barbero, Adrian Weller, Krzysztof Choromanski, Richard E. Turner, Petar Veli\v{c}kovi\'c
arXiv Machine Learning
Sep 30

Lost in Tokenization: Fundamental Trade-offs in Graph Tokenization for Transformers

The paper investigates how the choice of graph tokenization affects transformer expressivity. It analyzes three tokenization families—spectral, random‑walk, and adjacency—showing that each induces different depth requirements and that some tokenizations are inherently lossy or ill‑conditioned for certain tasks. The authors prove lower bounds and impossibility results for converting between tokenizations and validate these findings with experiments on synthetic and real‑world data.

By Maya Bechler-Speicher, Gilad Yehudai, Gil Harari, Clayton Sanford, Amir Globerson, Joan Bruna
arXiv Machine Learning
Aug 19

HyPE-GT: where Graph Transformers meet Hyperbolic Positional Encodings

HyPE-GT introduces a framework that generates learnable hyperbolic positional encodings for Graph Transformers, enabling the capture of complex hierarchical relationships in graph-structured data. Unlike traditional Euclidean encodings, HyPE’s hyperbolic encodings can be selected to suit specific downstream tasks and help mitigate oversmoothing in deep Graph Neural Networks. Experiments on molecular benchmarks and large-scale Open Graph Benchmark datasets demonstrate improved performance, while additional tests on Coauthor and Copurchase networks confirm HyPE’s effectiveness in controlling oversmoothing.

By Kushal Bose, Swagatam Das