arXiv Machine Learning

Signed Graph Pre-Training and Prompt Learning

arXiv Machine Learning
Aug 4

Nonlinear Laplacians Improve Signed-Directed Graph Learning

arXiv:2608. 00836v1 Announce Type: new Abstract: While signed-directed graphs have been studied using linear Laplacians in the design of graph neural networks, relatively little research has focused on developing non-linear Laplacian operators for such networks.

By Ali Parviz, Yuichi Yoshida
Hugging Face Trending Papers
Sep 8

Topology-induced Operators Reveal Complementary Graph Representations without Training

The paper demonstrates that high‑quality graph embeddings can be produced without complex models or training by propagating random features through topological structures derived from random walks and anonymous walks. These training‑free embeddings capture node proximity and structural roles, respectively, and perform competitively on node, edge, and graph tasks while often requiring less computation. Combining the two embedding types further improves inference quality for some tasks.

arXiv Machine Learning
Sep 3

From topology learning to graph generation: A unifying perspective

The article reviews the problem of learning graph structures from data, noting that research has traditionally split into two paths: inferring the topology of a single graph from observations on it, and learning a generative distribution from multiple observed graphs to sample new ones. It proposes a unified framework that treats both as inverse problems of a common graph generation process, reviews key methods, and discusses their interrelations, strengths, and limitations. The review highlights opportunities for cross‑paradigm integration and outlines future research directions.

By Xiaowen Dong, Hoi-To Wai, Siheng Chen, Laura Toni, Dorina Thanou
arXiv AI
Jun 19

Protein Representation Learning with Secondary-Structure and Energy-Filtered Hydrogen-Bond Graphs

arXiv:2606. 19374v1 Announce Type: cross Abstract: Graph-based representations are widely used in protein modeling, yet many existing approaches rely primarily on sequence adjacency or geometric proximity, which only partially reflect the principles governing protein folding.

By Mohamed Mouhajir, Limei Wang, El Houcine Bergou, Hajar El Hammouti, Lamiae Azizi, Dongqi Fu