arXiv AI

Structure is not mechanism: high-gain gated-FFN rows across text and genomic foundation models

The study investigates whether unusually high‑gain parameters in transformer models—specifically gated feed‑forward network (gated‑FFN) rows—play a critical functional role across both text and genomic foundation models. By computing exact bilinear weight operators and testing structural extremeness, the authors find that high‑gain rows are enriched for functional importance but do not reliably predict causal effect size or severity. The analysis reveals model‑specific causal organizations, including super‑additive interactions in DNABERT‑2 and position‑localized dependencies in GENERator, indicating that structural prominence signals enrichment rather than calibrated criticality.

arXiv Machine Learning
Aug 5

Sensitivity, Causality, and Repair Dissociate: A Layer-Wise Analysis of Perturbation Robustness and Its Scaling

arXiv:2608. 03842v1 Announce Type: cross Abstract: When a language model fails on surface-perturbed input (typos, OCR noise, homophones), "which layer is responsible" has three natural operationalizations: where representations diverge most (sensitivity), where restoring clean activations recovers the prediction (causality), and where a small adapter can repair the damage (compensatory capacity) - and we show these three layer maps dissociate.

By Nathan Labiosa, David Buff, Ena Nayak, Erica Donno
arXiv AI
Jul 23

Causal dictionary learning reveals and validates transcription-factor binding features in genomic language models

arXiv:2607. 19618v1 Announce Type: cross Abstract: Genomic language models achieve strong performance across regulatory-genomics tasks, yet what these models internally represent remains opaque, and the field lacks a principled procedure for verifying that an apparent ``concept'' inside a model is real rather than an artifact of sequence composition.

By Sarwan Ali
arXiv Computation and Language
Aug 25

Massive Activations in Hybrid Linear Attention Large Language Models: Pre-Attention Spikes and Inter-Spike Plateaus

arXiv:2608.12149v2 Announce Type: replace Abstract: We present the first systematic study of Massive activations (MAs) in layer-interleaved HLA LLMs and uncover two architecture-aligned morphologies:...

By Zunhai Su, Bohan Sun, Xialie Zhuang, Shuibai Zhang, He Xiao, Jing Xiong, Hengyuan Zhang, Zhongzhu Zhou, Tiantian Zhang, Ngai Wong, Chuan-Wei Kuo
Hugging Face Trending Papers
Aug 12

Massive Activations in Hybrid Linear Attention Large Language Models: Pre-Attention Spikes and Inter-Spike Plateaus

We present the first systematic study of Massive activations (MAs) in layer-interleaved HLA LLMs and uncover two architecture-aligned morphologies: MAs consistently spike immediately before full attention layers, forming pre-attention spikes (PAS), and can persist through intervening linear attention layers, giving rise to inter-spike plateaus (ISP). As full attention becomes denser, successive PAS become increasingly connected through ISP, ultimately recovering the stable MA morphology of full attention LLMs.

arXiv Computation and Language
Sep 4

How Perturbations Propagate: A Multi-Level Analysis of Robustness in Large Language Models

The paper investigates how six naturalistic and synthetic input perturbations affect decoder‑only language models at three levels: output behavior, hidden‑state geometry, and attention‑head function. Using GPT‑2 and Qwen2.5 checkpoints, the authors analyze layerwise geometry with centered kernel alignment and intrinsic dimension, and examine attention‑head responses in GPT‑2. They find that perturbation types produce distinct metric profiles that are not fully captured by output measures and vary across checkpoints, highlighting the need for multi‑level evaluation of robustness.

By Dun Li Chan, Emily Liu, Niyathi Allu, Christian Hoang
arXiv AI
Sep 1

Mechanism Shift During Post-training from Autoregressive to Masked Diffusion Language Models

The study investigates how post‑training of large autoregressive language models (ARMs) into masked diffusion models (MDMs) affects their internal computation. Across two 7B ARM‑MDM families and four diagnostic tasks, the authors find that MDMs retain much of the ARM’s high‑attribution pathways on prefix‑dominant tasks, but reorganize computation toward earlier layers on globally constrained tasks. Component‑level probes reveal that ARMs depend on sharply specialized components, whereas MDMs show weaker specialization and more diffuse output‑space alignment.

By Injin Kong, Hyoungjoon Lee, Yohan Jo