arXiv Machine Learning By Gabriel B\'en\'edict, Melanie Buechler, Gerard Riera-Sol\`a, Chlo\'e de Ancos, Yves Gaetan Nana Teukam, Moritz Freidank

When Edit Flows are Edit Jumps: replicating Edit Flows and EvoFlows

Read the original on arXiv Machine Learning →

The paper introduces EditJumps, the first open implementation of the Edit Flows and EvoFlows framework for antibody lead optimization. EditJumps trains a single generalist antibody editor on 1.66 M homolog pairs to generate homolog‑like variants of a seed sequence, enabling zero‑shot editing of unseen leads without per‑family retraining. The authors demonstrate that both Edit Flows and EvoFlows operate by sequentially applying edits at learned rates in continuous time, and they highlight the importance of open code for reproducing generative biology results, noting that published evaluation metrics can be highly sensitive to reference sample size.

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arXiv AI
Oct 12

AutoIndexer: Flexible-Order Decoding by Training Causal Models on Chains of Edits

AutoIndexer is a generative model that trains causal models on chains of edits, enabling flexible post‑generation modifications such as token insertions, substitutions, and deletions. It introduces marker tokens for opening and closing edits and moves a cursor through the token sequence, mimicking a text editor. By perturbing ground‑truth labels with inverse edit operations during training, AutoIndexer becomes robust to erroneous context and can perform editing tasks like code correction while maintaining performance on standard LLM benchmarks.

By Shu Ishida, Aliasghar Khani, Tianyu Zhang, The Cong Luong, James Seale Smith, Adam Gaier
arXiv Machine Learning
Aug 3

Overcoming the Weakest-Link Effect in LLM-Driven Program Optimization via Heterogeneous Edit Recombination

arXiv:2607. 28947v1 Announce Type: new Abstract: Large language models (LLMs) are increasingly used to solve complex problems by searching over program space, offering a general paradigm for scientific problems that can be naturally represented and solved as programs.

By Jingwen Fu, Zhen Liu, Yuhan Liu, He Zhang, Nanning Zheng
arXiv AI
Sep 10

Diffs vs. Whole Files: An Empirical Comparison of Iterative Edit-Based and Direct Generation for Flutter/Dart Code Models

The paper compares two output regimes for code-editing language models: direct generation, where the model outputs the entire modified file, and iterative diff-based generation, where the model emits a sequence of localized edits. Experiments on Flutter/Dart tasks show that direct generation consistently outperforms diff-based generation across metrics such as compilation success, token efficiency, and quality judgments. However, diff-based generation can be competitive for short, spatially localized edits, particularly in refactoring and error-handling tasks with few edit steps.

By Andrej Andrejev
arXiv AI
Sep 4

When Models Edit Too Much: On the Fidelity of Minimal Code Edits

The paper investigates the problem of over‑editing by large language models when repairing code, showing that even state‑of‑the‑art models like GPT‑5.5 frequently rewrite more code than necessary. Using a benchmark of 400 BigCodeBench problems with controlled AST corruptions, the authors quantify excess edits and demonstrate that a simple preservation instruction can reduce unnecessary changes and improve pass rates. They further explore training strategies, finding that reinforcement learning yields the best balance between edit fidelity and performance retention, highlighting edit fidelity as a distinct, measurable dimension of code‑repair quality.

By Tongyao Zhu, Wei Hern Lim, Min-Yen Kan