arXiv AI By Hao Xuan, Yu Huang, Jiang Bian, Xiangtao Liu

scPyviewer: a Python-native interactive viewer from AnnData single-cell data

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scPyviewer is a Python-native interactive web viewer that directly ingests AnnData objects, enabling non-programmers to explore single-cell datasets, embeddings, gene expression, metadata, and marker genes without converting to Seurat. In feature‑parity tests against three R Shiny tools, scPyviewer matches or exceeds baseline capabilities and uniquely supports cross‑dataset comparison over shared genes and matched cell types. Benchmarking on datasets ranging from 22,315 to ~313,000 cells shows scPyviewer renders all core views up to 3.6× faster, uses up to 5.2× less memory on the smallest dataset, and successfully handles 313,000 cells where Seurat fails due to memory limits. The tool also offers a Python API that returns Matplotlib figures and pandas tables for publication‑ready output.

Machine-generated by The Flow from the publisher's headline and feed description — not written or checked by a human. The full article lives at arXiv AI.

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