arXiv:2605. 14998v3 Announce Type: replace Abstract: From subcellular structures to entire organisms, many natural systems generate complex organisation through self-organisation: local interactions that collectively give rise to global structure without any blueprint of the outcome.
By Milton L. Montero, Elias Najarro, Jakob Schauser, Sebastian Risi
arXiv:2608. 00985v1 Announce Type: new Abstract: The rapid growth of single-cell transcriptomic data has enabled the development of foundation models pretrained primarily by reconstructing masked expression values.
By Jiaqi Xiong, Yuntao hu, Yu Zheng, Yifei Shi, Xinyue Guo, Jiaxin Qi
arXiv:2506. 11152v4 Announce Type: replace-cross Abstract: Single-cell transcriptomics and proteomics have become a great source for data-driven insights into biology, enabling the use of advanced deep learning methods to understand cellular heterogeneity and gene expression at the single-cell level.
By Hiren Madhu, Jo\~ao Felipe Rocha, Tinglin Huang, Siddharth Viswanath, Smita Krishnaswamy, Rex Ying
arXiv:2602. 15253v2 Announce Type: replace Abstract: Neural scaling laws -- power-law relationships between loss, model size, and data -- have been extensively documented for language and vision transformers, yet their existence in single-cell genomics remains largely unexplored.
By Ihor Kendiukhov
arXiv:2506. 22228v2 Announce Type: replace-cross Abstract: Single-cell sequencing is revolutionizing biology by enabling detailed investigations of cell-state transitions.
By Rong Ma, Xi Li, Jingyuan Hu, Bin Yu
The paper investigates a cellular‑automata substrate where each pixel hosts a tiny neural network that senses its neighbors and survives only by self‑replication with mutated weights. Starting from a few founders, the system evolves into a spatially organized ecosystem of competing species, and the authors introduce coarse‑grained metrics to quantify phenotypic and genotypic diversity at two scales. Experiments show that high phenotypic diversity reduces genotypic diversity and vice versa, and that full‑genome hash colouring reveals lineage structures missed by random‑weight probes.
By Sanyam Jain, Felix Simon Reimers, Stefano Nichele