Language as the Interface: Foundation-Model Contrastive Learning Links Transcriptomes and Electrophysiology
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arXiv:2608. 14355v1 Announce Type: new Abstract: Spatial transcriptomics (ST) enables the simultaneous profiling of gene expression and tissue morphology, creating an opportunity to learn multimodal representations capturing shared morpho-transcriptomic structure.
arXiv:2606. 18703v1 Announce Type: new Abstract: Pretrained biological language models expose per-token probability distributions through masked-token prediction, providing the likelihood interface central to sequence design, variant scoring, and mechanistic interpretation.
arXiv:2605. 00025v3 Announce Type: replace-cross Abstract: Speech neuroprosthesis systems decode intended speech from neural activity in the absence of audible output, offering a path to restoring communication for individuals with speech-impairing conditions.
arXiv:2608. 00985v1 Announce Type: new Abstract: The rapid growth of single-cell transcriptomic data has enabled the development of foundation models pretrained primarily by reconstructing masked expression values.
Neural State Prediction (NSP) is a latent‑predictive framework designed to curb shortcut learning in EEG foundation models. By using a target encoder updated with an exponential moving average, identity residualization, and topology‑separated context, NSP constrains both the prediction target and the available context. Trained on 2.2 million EEG segments, NSP outperforms baselines on 14 datasets in the EEG‑FM‑Bench, achieving 63.94 % macro balanced accuracy.
arXiv:2608.24597v1 Announce Type: cross Abstract: Electroencephalography (EEG) is a widely used window into human brain function, but most EEG models remain tied to a one-dataset-one-model supervised...