arXiv Machine Learning June 26, 2026 By Abderaouf Bahi

Graph Neural Networks Applications Across Domains: All Insights You Need

Read the original on arXiv Machine Learning →

arXiv:2606. 27202v1 Announce Type: new Abstract: Graph neural networks have moved from a niche representation-learning technique to the default model class wherever data carry relational structure.

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arXiv Machine Learning

Jul 17

What Do Temporal Graph Learning Models Learn?

arXiv:2510. 09416v4 Announce Type: replace Abstract: Learning on temporal graphs has become a central topic in graph representation learning, with numerous benchmarks indicating the strong performance of state-of-the-art models.

By Abigail J. Hayes, Tobias Schumacher, Markus Strohmaier

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Jul 28

A Survey of Graph Transformers: Architectures, Theories and Applications

arXiv:2502. 16533v3 Announce Type: replace-cross Abstract: Graph Transformers (GTs) have demonstrated a strong capability in modeling graph structures by addressing the intrinsic limitations of graph neural networks (GNNs), such as over-smoothing and over-squashing.

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Jun 30

GLIP: Graph and LLM Joint Pretraining for Graph-Level Tasks

arXiv:2606. 29773v1 Announce Type: new Abstract: Graphs are widely used to model relational systems, with applications in domains such as social networks, finance, and biomedicine.

By Haoxin Sun, Yiqing Lin, Yajun Huang, Chenhui Dong, Mingjun Li, Zhongzhi Zhang

llms diffusion fine-tuning benchmarks safety

arXiv Machine Learning

Jun 10

When Design Rules Break: Benchmark Composition Determines Whether Label Informativeness Predicts GNN Aggregator Choice

arXiv:2606. 10249v1 Announce Type: new Abstract: We examine whether graph neural network (GNN) design rules generalize across benchmark families by studying aggregator selection (sum, mean, max) on 24 node-classification datasets spanning citation, heterophilic, LINKX Facebook-100, co-purchase, and co-authorship graphs.

By Neha Sharma, Ritesh Sharma

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arXiv Machine Learning

Jun 2

OgBench: A Framework for Evaluating Graph Neural Networks on Omics Data

arXiv:2605. 15511v2 Announce Type: replace Abstract: Graph Neural Networks (GNNs) have become the dominant framework for inductive graph-level learning.

By Louisa Cornelis, Johan Mathe, Louis Van Langendonck, Guillermo Bern\'ardez, Nina Miolane

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arXiv Computation and Language

Sep 3

HyGRAIL: Cost-Aware and Evidence-Grounded Scientific Hypothesis Discovery over Knowledge Graphs

HyGRAIL is a framework for discovering scientific hypotheses in incomplete knowledge graphs by combining a graph neural network (GNN) triage with large language model (LLM) review. The GNN scores candidate hypotheses and routes only ambiguous cases to the LLM, which receives structured evidence from the graph converted into natural language. Experiments on MatKG show HyGRAIL achieves the highest F1 score, improves over baselines, and cuts LLM calls by over 54%.

By Yihang Sun, Zhihan Zhu, Zhiyuan Jiang, Jingyi Ge, Zixuan Li, Jiaxuan You

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