arXiv Machine Learning By Humaira Anzum, Md Ishtyaq Mahmud, Jagan Mohan Reddy Dwarampudi, Tania Banerjee

CDS: Counterfactual Directionality Score for Structured Interventions in Spatial Graphs

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arXiv:2607. 13508v1 Announce Type: new Abstract: Quantifying directional influence between node populations is a fundamental problem in graph-based modeling, particularly in spatial biological systems where cell-cell interactions shape functional outcomes.

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arXiv Machine Learning
Jul 24

HierarchicalDAEW: Domain-Aware Edge-Weighted Graph Convolution with Evidential Uncertainty for Multi-Section Spatial Gene Expression Prediction from H&E Histology

arXiv:2607. 20896v1 Announce Type: new Abstract: Spatial transcriptomics assays remain costly and technically demanding, restricting transcriptome-wide profiling to specialist settings and preventing routine clinical deployment.

By Kritanu Chattopadhyay, Soumya Chatterjee, Ondrej Krejcar, Debotosh Bhattacharjee
arXiv Machine Learning
Jun 5

HEIST: A Graph Foundation Model for Spatial Transcriptomics and Proteomics Data

arXiv:2506. 11152v4 Announce Type: replace-cross Abstract: Single-cell transcriptomics and proteomics have become a great source for data-driven insights into biology, enabling the use of advanced deep learning methods to understand cellular heterogeneity and gene expression at the single-cell level.

By Hiren Madhu, Jo\~ao Felipe Rocha, Tinglin Huang, Siddharth Viswanath, Smita Krishnaswamy, Rex Ying
arXiv Machine Learning
Jun 30

Spatial Deconfounder: Interference-Aware Deconfounding for Spatial Causal Inference

arXiv:2510. 08762v2 Announce Type: replace Abstract: Causal inference in spatial domains faces two intertwined challenges: (1) unmeasured spatial factors, such as weather, air pollution, or mobility, that confound treatment and outcome, and (2) interference from nearby treatments that violate standard no-interference assumptions.

By Ayush Khot, Miruna Oprescu, Maresa Schr\"oder, Ai Kagawa, Xihaier Luo
arXiv Machine Learning
Jun 18

UST-GNN: A Unified Spatial--Topological Graph Neural Network Framework for Urban Analytics--Demonstrated through a Case Study on Urban Health Prediction

arXiv:2504. 04739v3 Announce Type: replace Abstract: Understanding how social, demographic, environmental, and spatial factors jointly shape urban outcomes is essential for sustainable urban development and evidence-based policy.

By Minwei Zhao, Sanja Scepanovic, Stephen Law, Ivica Obadic, Cai Wu, Daniele Quercia
arXiv Machine Learning
Jun 9

Causal Representation Learning from Network Data

arXiv:2509. 01916v2 Announce Type: replace Abstract: Causal disentanglement from soft interventions is identifiable under the assumptions of linear interventional faithfulness and availability of both observational and interventional data.

By Jifan Zhang, Michelle M. Li, Elena Zheleva