arXiv AI

COF26: A new on-top functional for multiconfiguration pair-density functional theory

arXiv:2605. 06215v2 Announce Type: replace-cross Abstract: Multiconfiguration pair-density functional theory (MC-PDFT) provides an efficient and accurate framework for computing electronic energies in strongly correlated molecular systems, with the quality of the on-top functional being a key determinant of its predictive accuracy.

arXiv Machine Learning
Jun 2

Benchmark Dataset for Catalysis on 2D MXenes

arXiv:2606. 00794v1 Announce Type: cross Abstract: Merging first-principles calculations with machine learning (ML), we aim to accelerate the exploration of catalytic behaviour in novel materials.

By Pavlo Melnyk, Anmar Karmush, M{\aa}rten Wadenb\"ack, Ania Beatriz Rodr\'iguez-Barrera, Johanna Rosen, Michael Felsberg, Jonas Bj\"ork
arXiv Machine Learning
5d ago

Scaling Density Functional Theory with Gaussian Splatting

The paper introduces Gaussian Splatting for Density Functional Theory (GS‑DFT), a method that represents molecular orbitals as a cloud of Gaussians optimized via gradient descent. GS‑DFT replaces fixed atom‑centered basis sets with an adaptive, differentiable orthogonalization and efficient two‑electron integral evaluation, achieving accuracy comparable to large conventional bases with far fewer parameters. The solver scales quadratically with cloud size, enabling simulations of up to 2,742 atoms on a single four‑GPU node at triple‑zeta precision.

By Andr\'es Guzm\'an-Cordero, Cindy Zhang, Majdi Hassan, Marta Skreta, Kirill Neklyudov, Matija Medvidovi\'c
arXiv Machine Learning
Jul 7

FastCSP: Accelerated Molecular Crystal Structure Prediction with Universal Model for Atoms

arXiv:2508. 02641v2 Announce Type: replace-cross Abstract: Molecular crystal structure prediction (CSP) is essential for applications in pharmaceuticals and organic electronics.

By Vahe Gharakhanyan, Yi Yang, Luis Barroso-Luque, Daniel S. Levine, Sushree Jagriti Sahoo, Brandon M. Wood, Kyle Michel, Muhammed Shuaibi, Gregory J. O. Beran, Viachaslau Bernat, Misko Dzamba, Xiang Fu, Meng Gao, Xingyu Liu, Benjamin K. Miller, Keian Noori, Lafe J. Purvis, Tingling Rao, Ammar Rizvi, Matt Uyttendaele, Andrew J. Ouderkirk, Chiara Daraio, C. Lawrence Zitnick, Arman Boromand, Noa Marom, Zachary W. Ulissi, Anuroop Sriram
arXiv AI
Aug 20

Coupled-cluster molecular properties across the main group that extrapolate beyond training size

The paper introduces MEHnet-MG, an equivariant neural network that predicts a one‑electron Hamiltonian from a single inexpensive B3LYP/def2‑SVP calculation and uses it to compute a wide range of molecular properties—energy, optical gap, dipole, quadrupole, polarizability, Mulliken charges, and Mayer bond orders—at coupled‑cluster accuracy for nine main‑group elements, including phosphorus, sulfur, and chlorine. Trained on a new CCSD(T) dataset, the model reduces property errors by factors ranging from 3.8 to 230 compared to various DFT methods while adding only ~25 ms per molecule. Importantly, by deriving properties from a predicted Hamiltonian rather than pooling atomic features, the architecture naturally incorporates correct size‑scaling, enabling accurate extrapolation to large π‑conjugated systems (up to 58 atoms) where traditional pooling‑based models fail.

By Wenhao He, Xu Chen, Noah Song, Haowei Xu, Tim S. Hindges, Bohan Li, Zihan Lin, Yu Yao, Avetik R. Harutyunyan, Fang Liu, Yao Wang, Hao Tang, Ju Li
arXiv AI
Aug 26

Learning the Kohn-Sham map with neural operators for quasi-linear scaling density functional theory

The paper presents a neural operator that learns the Kohn–Sham map, directly predicting electron density from the Kohn–Sham potential without orbital diagonalization. Using a domain‑invariant SE(3)‑equivariant Fourier neural operator trained on 8,504 molecules and solids, the model achieves quasi‑linear scaling self‑consistent field (SCF) convergence across diverse systems—including organic molecules, insulators, and metals—while reproducing Kohn–Sham DFT accuracy for densities, spectra, and structural observables. This enables large‑scale simulations, such as magnesium dislocation densities with 82,500 valence electrons, on a single GPU.

By Danish Khan, Maurice D. Hanisch, Nikolai Argatoff, Evan Xie, Sandeep Sharma, Anima Anandkumar
arXiv AI
Aug 17

Reaction-Transformation-Aware Flow Matching for Generalizable Transition State Generation

arXiv:2608. 14076v1 Announce Type: cross Abstract: Transition-state (TS) structures define the energetic barriers and mechanistic pathways of elementary chemical reactions, yet their identification remains computationally demanding because conventional saddle-point searches require expensive quantum-mechanical calculations.

By Kaipeng Zeng, Wenxi Zhai, Shengrui Xu, Jie Zhao, Bowen Li, Shiyue Wang, Junchi Yan, Tong Zhu
arXiv AI
Sep 17

BOOM: Benchmarking Out-Of-distribution Molecular Property Predictions of Machine Learning Models

BOOM is a new benchmark for evaluating out‑of‑distribution (OOD) molecular property predictions in machine learning. It provides chemically‑informed tests across common property prediction tasks and assesses over 150 model‑task combinations. The study shows that current models, including chemical foundation models, struggle to generalize OOD, with the best model still exhibiting three times higher error than in‑distribution predictions.

By Evan R. Antoniuk, Shehtab Zaman, Tal Ben-Nun, Peggy Li, James Diffenderfer, Busra Sahin, Obadiah Smolenski, Everett Grethel, Tim Hsu, Anna M. Hiszpanski, Kenneth Chiu, Bhavya Kailkhura, Brian Van Essen
arXiv Machine Learning
Jul 1

ElemeNet: Multiscale Molecular Machine Learning with Uncertainty Quantification Across the Periodic Table

arXiv:2606. 30961v1 Announce Type: cross Abstract: Advances in deep learning architectures and representations have enabled ML-driven chemical property prediction, but state-of-the-art (SOTA) models have remained largely confined to independent codebases and lack support for diverse chemical species.

By Jacob W. Toney, Samir Darouich, Yiran Wang, Aaron G. Garrison, Johannes K\"astner, Heather J. Kulik