arXiv Machine Learning

Response-state Learning for Transferable Vibrational Spectroscopic Characterization with Electron Prior

The paper introduces SO(3) Equivariant Neural Kalman Networks (SENK), a model that predicts vibrational spectra by cascading an equivariant transformer backbone, an Equivariant Neural Kalman bridge, and an NBO-informed electronic-prior pathway. SENK improves accuracy over DetaNet on QM9S and QMe14S datasets while maintaining full-spectrum IR and Raman fidelity from small molecules to drug-like systems. It also remains stable and selectively enhances spectrally sensitive features in biomolecular systems with complex stereoelectronic effects, enabling transferable vibrational spectroscopy across diverse molecular materials.

arXiv Machine Learning
Jul 23

Hypothesis-and-Refinement Learning of Organic Structures from Multimodal Spectroscopic Data

arXiv:2607. 19816v1 Announce Type: cross Abstract: Determining molecular structures from spectroscopic data remains fundamentally challenging because the inverse problem is intrinsically underdetermined: individual spectra are sparse, low-dimensional, and encode only partial structural evidence relative to the vast space of possible molecules.

By Chengchun Liu, Zhiyuan Yan, Li Yuan, Hao Li, Boxuan Zhao, Yonghong Tian, Bartosz A. Grzybowski, Fanyang Mo
arXiv AI
Jun 15

A Fixed-Point Neural Operator for Size- and Functional-Transferable Hamiltonian Prediction

arXiv:2606. 14498v1 Announce Type: cross Abstract: Predicting the Kohn-Sham Hamiltonian with machine learning can accelerate density functional theory while retaining access to molecular orbitals, energy levels, and electronic-structure observables that energy-only surrogates cannot resolve.

By Yunhong Lou, Xihang Yue, Xinran Wei, Tianqi Deng, Linchao Zhu
arXiv Machine Learning
Jun 30

Shoot from the HIP: Hessian Interatomic Potentials without derivatives

arXiv:2509. 21624v3 Announce Type: replace Abstract: Fundamental tasks in computational chemistry, from transition state search to vibrational analysis, rely on molecular Hessians, which are the second derivatives of the potential energy.

By Andreas Burger, Luca Thiede, Nikolaj R{\o}nne, Varinia Bernales, Nandita Vijaykumar, Tejs Vegge, Arghya Bhowmik, Alan Aspuru-Guzik
arXiv Machine Learning
Jul 30

Data Fusion and Contrastive Alignment for Unconstrained IR Molecular Structure Elucidation

arXiv:2607. 26164v1 Announce Type: new Abstract: Automated molecular structure elucidation from infrared (IR) spectroscopy data has seen significant advancements in recent years, but its broad applicability is limited by a reliance on pre-determined chemical formulas provided as auxiliary model inputs.

By Ethan J. Mick, Campbell A. Sweet, Matthias J. Young, Derek T. Anderson
arXiv Machine Learning
Aug 24

HIP: Hessian Interatomic Potentials without derivatives

arXiv:2509.21624v4 Announce Type: replace Abstract: Molecular Hessians, the second derivatives of the potential energy, are fundamental to many workflows in computational chemistry. Usually, accurate...

By Andreas Burger, Luca Thiede, Nikolaj R{\o}nne, Varinia Bernales, Nandita Vijaykumar, Tejs Vegge, Arghya Bhowmik, Alan Aspuru-Guzik
arXiv Machine Learning
Sep 7

Hessian-based molecular conformation augmentation for a scalable and efficient strategy of machine learning interatomic potentials

The paper introduces two Hessian-based data augmentation techniques—UniAug and ModeAug—to improve machine‑learning interatomic potentials (MLIPs). These methods use simple Taylor expansions to generate augmented configurations without modifying training objectives or increasing computational overhead. Experiments on both non‑equilibrium and equilibrium datasets show that the augmentations enhance model accuracy and provide practical guidelines for specific tasks.

By Bumju Kwak, Jeonghee Jo
Hugging Face Trending Papers
Jul 12

Transferable Implicit Solvent Machine Learning Potential for Drugs and Proteins Approaching Ab Initio Accuracy

Machine learning interatomic potentials (MLPs) have revolutionized atomistic modeling, offering the potential to replace traditional methods like Density Functional Theory (DFT). However, inference time of MLPs is orders of magnitude slower than that of classical force fields, hindering real-world applications for biomolecular systems that require timescales of microseconds and beyond.

arXiv AI
Aug 14

Simulation-to-real transfer learning for infrared spectroscopic chemical sensing and analysis from molecules to complex samples

arXiv:2608. 13341v1 Announce Type: cross Abstract: Infrared (IR) spectroscopy is widely used for chemical sensing, but extracting reliable chemical information from spectra remains challenging.

By Yusen Tan, Yixuan Chen, Zheng Fang, Pan Liu, Yifan Li, Qinyu Guo, Zhedong Lin, Yuqiang Li, Xiangxiang Zeng, Tong Wang, Jun Xia