arXiv AI

An Agentic Framework Using Rules and LLMs for Embedding and Annotating Descriptive Document Layouts: A Plant Science Use Case

arXiv:2608. 14587v1 Announce Type: new Abstract: Background: Recent advances in information retrieval (IR) leverage both dense and sparse representations, large language models (LLMs), and specialized retrieval models to improve ranking accuracy, relevance, and cross-lingual performance.

arXiv AI
Aug 6

TourSynbio-Search: A Large Language Model Driven Agent Framework for Unified Search Method for Protein Engineering

arXiv:2411. 06024v1 Announce Type: cross Abstract: The exponential growth in protein-related databases and scientific literature, combined with increasing demands for efficient biological information retrieval, has created an urgent need for unified and accessible search methods in protein engineering research.

By Yungeng Liu, Zan Chen, Yu Guang Wang, Yiqing Shen
Hugging Face Trending Papers
Jun 30

An Agentic AI Framework to Accelerate Scientific Discovery in Plant Phenotyping

High-throughput plant phenotyping now generates image derived datasets far faster than scientists can analyze them. At Oak Ridge National Laboratory's Advanced Plant Phenotyping Laboratory (APPL), automated stations image hundreds of plants daily across multiple remote sensing modalities; yet, trait extraction and interpretation remain manual, expert-bound, and strictly post-hoc, making analysis, not acquisition, the binding constraint on discovery.

arXiv AI
Jul 28

VecTree-RAG: An Agentic Retrieval-Augmented Generation Framework Combining Vector and Tree Retrieval for Efficiency and Accuracy

arXiv:2607. 23006v1 Announce Type: cross Abstract: Scientific question answering requires a retrieval system to solve two distinct problems: identifying which papers are relevant and locating the supporting evidence within those papers.

By Xinyan Zhong, Yuwei Shi, Yuqi Wei, Chen Shen, Tianhang Zhou, Zhenghao Wu
arXiv AI
Jun 12

Agents-K1: Towards Agent-native Knowledge Orchestration

arXiv:2606. 13669v1 Announce Type: new Abstract: Current LLM-based research agents have advanced through agent orchestration, yet largely overlook scientific knowledge orchestration.

By Zongsheng Cao, Bihao Zhan, Jinxin Shi, Jiong Wang, Fangchen Yu, Zhijie Zhong, Zijie Guo, Tianshuo Peng, Zhuo Liu, Yi Xie, Xiang Zhuang, Yue Fan, Runmin Ma, Shiyang Feng, Xiangchao Yan, Anran Liu, Peng Ye, Wenlong Zhang, Shufei Zhang, Chunfeng Song, Fenghua Ling, Jie Zhou, Liang He, Bo Zhang, Lei Bai
arXiv AI
Jun 2

Dr. DocBench: A Comprehensive Benchmark for Expert-Level and Difficult Document Parsing

arXiv:2606. 01393v1 Announce Type: cross Abstract: Document parsing and recognition are fundamental capabilities for vision-language models (VLMs) and document processing systems.

By Minglai Yang, Xinyan Velocity Yu, Pengyuan Li, Xinyu Guo, Zhenting Qi, Konwoo Kim, Longtian Ye, Xiaolong Luo, Jinhe Bi, Henry Zhang, Haris Riaz, Xuan Zhang, Yunze Xiao, Bangya Liu, Tom Tang, Yunfei Zhao, Qunshu Lin, Zihan Wang, Minghao Liu, Michael Lingzhi Li, Yilun Du, Jesse Thomason, Rogerio Feris, Alex Pentland, Zexue He
arXiv AI
Jul 29

From Naive RAG to Deep Agentic Retrieval: An Evolving Context Engineering Pipeline for Regulatory Compliance

arXiv:2607. 24791v1 Announce Type: cross Abstract: Retrieval-augmented generation (RAG) is the dominant paradigm for applying large language models (LLMs) to enterprise document corpora, yet naive implementations encounter hard limits as corpus scale and query complexity grow.

By Mishca de Costa, Muhammad Saleh Anwar, Dave Mercier, Issam Hammad