arXiv:2605. 28965v2 Announce Type: replace Abstract: Linking free-text phenotype descriptions to ontology terms, typically referred to as phenotype annotation, is essential for the cross-study integration of comparative morphological data.
By James P. Balhoff, Hilmar Lapp
arXiv:2411. 06024v1 Announce Type: cross Abstract: The exponential growth in protein-related databases and scientific literature, combined with increasing demands for efficient biological information retrieval, has created an urgent need for unified and accessible search methods in protein engineering research.
By Yungeng Liu, Zan Chen, Yu Guang Wang, Yiqing Shen
arXiv:2606. 31831v1 Announce Type: new Abstract: High-throughput plant phenotyping now generates image derived datasets far faster than scientists can analyze them.
By Renan Souza, Daniel Rosendo, Kelsey Carter, John Lagergren, Fr\'ed\'eric Suter, Shelaine L. Curd, Gerald A. Tuskan, Rafael Ferreira da Silva, David Weston
arXiv:2607. 28229v1 Announce Type: cross Abstract: The web is increasingly accessed by AI agents rather than humans.
By Luigi Sigillo, Matteo Silvestri, Francesco Tabaro, Rajat Bhatnagar, Syed Irtaza Mubashar, Matt Jeffryes, Daljit Nijjer, Vittorio Perera, Ola Spjuth, Julio Saez-Rodriguez, Melissa Harrison, Fabio Petroni
High-throughput plant phenotyping now generates image derived datasets far faster than scientists can analyze them. At Oak Ridge National Laboratory's Advanced Plant Phenotyping Laboratory (APPL), automated stations image hundreds of plants daily across multiple remote sensing modalities; yet, trait extraction and interpretation remain manual, expert-bound, and strictly post-hoc, making analysis, not acquisition, the binding constraint on discovery.
arXiv:2607. 23006v1 Announce Type: cross Abstract: Scientific question answering requires a retrieval system to solve two distinct problems: identifying which papers are relevant and locating the supporting evidence within those papers.
By Xinyan Zhong, Yuwei Shi, Yuqi Wei, Chen Shen, Tianhang Zhou, Zhenghao Wu
arXiv:2606. 13669v1 Announce Type: new Abstract: Current LLM-based research agents have advanced through agent orchestration, yet largely overlook scientific knowledge orchestration.
By Zongsheng Cao, Bihao Zhan, Jinxin Shi, Jiong Wang, Fangchen Yu, Zhijie Zhong, Zijie Guo, Tianshuo Peng, Zhuo Liu, Yi Xie, Xiang Zhuang, Yue Fan, Runmin Ma, Shiyang Feng, Xiangchao Yan, Anran Liu, Peng Ye, Wenlong Zhang, Shufei Zhang, Chunfeng Song, Fenghua Ling, Jie Zhou, Liang He, Bo Zhang, Lei Bai
arXiv:2606. 01617v1 Announce Type: cross Abstract: Large language models excel at general tasks but underperform smaller supervised models in specialized, high-stakes domains where training labels are costly.
By Tianyi Xu, Yaolun Zhang, Xuan Ouyang, Huazheng Wang
arXiv:2606. 01393v1 Announce Type: cross Abstract: Document parsing and recognition are fundamental capabilities for vision-language models (VLMs) and document processing systems.
By Minglai Yang, Xinyan Velocity Yu, Pengyuan Li, Xinyu Guo, Zhenting Qi, Konwoo Kim, Longtian Ye, Xiaolong Luo, Jinhe Bi, Henry Zhang, Haris Riaz, Xuan Zhang, Yunze Xiao, Bangya Liu, Tom Tang, Yunfei Zhao, Qunshu Lin, Zihan Wang, Minghao Liu, Michael Lingzhi Li, Yilun Du, Jesse Thomason, Rogerio Feris, Alex Pentland, Zexue He
Large language models excel at general tasks but underperform smaller supervised models in specialized, high-stakes domains where training labels are costly. We address this regime with EvoPool, an evolutionary multi-agent framework inspired by Darwinian evolution.
arXiv:2607. 03245v1 Announce Type: new Abstract: High-throughput plant phenotyping generates valuable data that often remains trapped in unstructured text and isolated RGB images.
By Jayant Ghadge, Soumyashree Kar, Surya S. Durbha
arXiv:2607. 24791v1 Announce Type: cross Abstract: Retrieval-augmented generation (RAG) is the dominant paradigm for applying large language models (LLMs) to enterprise document corpora, yet naive implementations encounter hard limits as corpus scale and query complexity grow.
By Mishca de Costa, Muhammad Saleh Anwar, Dave Mercier, Issam Hammad