arXiv Machine Learning

SU(2)-Equivariant Spinor Message Passing for Molecular Magnetism

The paper introduces eSpinor, an SU(2)-equivariant graph neural network that propagates spinor features for predicting molecular magnetism. By initializing spinor features from eigenvectors of an approximate spin‑orbit coupling Hamiltonian and employing gauge‑covariant message passing with a gauge‑invariant readout, eSpinor achieves more accurate zero‑field‑splitting predictions for cobalt single‑molecule magnets and improves electron‑spin correlation predictions for a dysprosium MRI probe compared to existing methods. The study demonstrates that incorporating SU(2) symmetry as an inductive bias enhances performance on magnetic properties and highlights that static tensor errors can lead to different dynamical errors, suggesting careful model selection for specific observables.

arXiv AI
Jul 22

ChemHyperMag: Physics-informed magnetic hypergraph learning improves molecular ADMET prediction

arXiv:2607. 18332v1 Announce Type: cross Abstract: Accurate prediction of ADMET (Absorption, Distribution, Metabolism, Excretion, and Toxicity) is important for drug discovery.

By Hexiao Ding, Hongzhao Chen, Jing Lan, Yufeng Jiang, Zihong Luo, Zehua Xiong, Tianlong Ruan, Yunlin Mao, Nga Chun Ng, Gwing Kei Yip, Gerald W. Y. Cheng, Kate Inyoung Oh, Jing Cai, Liang-Ting Lin, Jung Sun Yoo
arXiv AI
Oct 31

Where the Error Lives: Spectral Representations of Learned Kohn-Sham Hamiltonians

The paper investigates how small entry‑wise errors in machine‑learned Kohn‑Sham Hamiltonians can still lead to inaccurate eigenvalues and eigenvectors. It shows that existing physics‑informed losses only partially capture the error, and proposes using the cumulative local density of states (cumulative LDOS) as a complete training signal that uniquely determines the Hamiltonian. Fine‑tuning three Hamiltonian networks with this loss, called FermiScope, reduces HOMO‑LUMO gap errors without increasing element‑wise error, and the improvement generalizes to out‑of‑distribution and molecular‑dynamics scenarios.

By Fang Sun, Hekai Cheng, Ruoyan Li, Yuanzhou Chen, Wei Wang, Jason Cong, Yizhou Sun
arXiv Machine Learning
Jul 23

OrbitAll: A Unified Quantum Mechanical Representation Deep Learning Framework for All Molecular Systems

arXiv:2507. 03853v2 Announce Type: replace Abstract: We introduce OrbitAll, a geometry- and physics-informed deep learning framework that encodes any molecular system with arbitrary charges, spins, and environmental effects using electronic structure information.

By Beom Seok Kang, Vignesh C. Bhethanabotla, Amin Tavakoli, Maurice D. Hanisch, Arimitsu Horikawa-Strakovsky, Miguel Nouman, Danish Khan, William A. Goddard III, Anima Anandkumar
arXiv Machine Learning
Jun 30

Shoot from the HIP: Hessian Interatomic Potentials without derivatives

arXiv:2509. 21624v3 Announce Type: replace Abstract: Fundamental tasks in computational chemistry, from transition state search to vibrational analysis, rely on molecular Hessians, which are the second derivatives of the potential energy.

By Andreas Burger, Luca Thiede, Nikolaj R{\o}nne, Varinia Bernales, Nandita Vijaykumar, Tejs Vegge, Arghya Bhowmik, Alan Aspuru-Guzik
arXiv Machine Learning
Aug 24

HIP: Hessian Interatomic Potentials without derivatives

arXiv:2509.21624v4 Announce Type: replace Abstract: Molecular Hessians, the second derivatives of the potential energy, are fundamental to many workflows in computational chemistry. Usually, accurate...

By Andreas Burger, Luca Thiede, Nikolaj R{\o}nne, Varinia Bernales, Nandita Vijaykumar, Tejs Vegge, Arghya Bhowmik, Alan Aspuru-Guzik
arXiv Machine Learning
Jul 1

ElemeNet: Multiscale Molecular Machine Learning with Uncertainty Quantification Across the Periodic Table

arXiv:2606. 30961v1 Announce Type: cross Abstract: Advances in deep learning architectures and representations have enabled ML-driven chemical property prediction, but state-of-the-art (SOTA) models have remained largely confined to independent codebases and lack support for diverse chemical species.

By Jacob W. Toney, Samir Darouich, Yiran Wang, Aaron G. Garrison, Johannes K\"astner, Heather J. Kulik
arXiv Machine Learning
Jul 23

Hypothesis-and-Refinement Learning of Organic Structures from Multimodal Spectroscopic Data

arXiv:2607. 19816v1 Announce Type: cross Abstract: Determining molecular structures from spectroscopic data remains fundamentally challenging because the inverse problem is intrinsically underdetermined: individual spectra are sparse, low-dimensional, and encode only partial structural evidence relative to the vast space of possible molecules.

By Chengchun Liu, Zhiyuan Yan, Li Yuan, Hao Li, Boxuan Zhao, Yonghong Tian, Bartosz A. Grzybowski, Fanyang Mo
arXiv Machine Learning
Oct 19

Multitask learning with semiempirical orbital charges enables sample-efficient MLIPs

The paper presents a multitask learning approach that incorporates orbitally resolved semiempirical charges into machine learning interatomic potentials (MLIPs). By training with inexpensive GFN1‑xTB orbital charges, the model reduces energy mean absolute error by 58% compared to energy‑only baselines and needs five times less data to achieve similar performance. The method also outperforms or matches models using costly DFT charges and preserves inference efficiency, offering a scalable way to build accurate, data‑efficient foundation models for complex chemical systems.

By Ihor Neporozhnii, Sjoerd Hoogland, Oleksandr Voznyy
arXiv Machine Learning
Jun 18

Robust and Interpretable Adaptation of Equivariant Materials Foundation Models via Sparsity-promoting Fine-tuning

arXiv:2606. 18691v1 Announce Type: new Abstract: Pre-trained materials foundation models, or machine learning interatomic potentials, leverage general physicochemical knowledge to effectively approximate potential energy surfaces.

By Youngwoo Cho, Seunghoon Yi, Wooil Yang, Sungmo Kang, Young-woo Son, Jaegul Choo, Joonseok Lee, Soo Kyung Kim, Hongkee Yoon