arXiv Machine Learning By Rong Fu, Yongtai Liu, Xiaowen Ma, Haoyu Zhao, Shuo Yin, Yiqing Lyu, Long Zhang, Wangyu Wu

DynImmune-BERT: Dynamic Immune Repertoire Modeling with Neural ODE Driven Continuous Transformers

Read the original on arXiv Machine Learning →

arXiv:2607. 17244v1 Announce Type: new Abstract: Longitudinal T cell receptor repertoires contain signals of clonal expansion, contraction, disappearance, and reappearance after immune perturbation.

Summary generated by The Flow from the publisher's feed. The full article lives at arXiv Machine Learning.

arXiv Machine Learning
Jul 23

SwiftRepertoire: Few-Shot Immune-Signature Synthesis via Dynamic Kernel Codes

arXiv:2602. 01051v5 Announce Type: replace Abstract: Repertoire-level analysis of T cell receptors offers a biologically grounded signal for disease detection and immune monitoring, yet practical deployment is impeded by label sparsity, cohort heterogeneity, and the computational burden of adapting large encoders to new tasks.

By Rong Fu, Muge Qi, Yang Li, Yabin Jin, Jiekai Wu, Chunlei Meng, Juntao Gao, Li Bao, Qi Zhao, Wei Luo, Youjin Wang, Simon Fong
arXiv AI
Jul 22

Biological Amnesia in ICU Time-Series Prediction: A Drift-Adaptive Two-Stream Architecture with Temporal Retrieval

arXiv:2607. 19020v1 Announce Type: cross Abstract: Background: Clinical decision support systems degrade silently as treatment protocols evolve, yet standard adaptation methods treat models as monolithic blocks, unable to distinguish stable patient physiology from shifting institutional practice.

By Fatema Ferdous Tamanna, K. M. Merajul Arefin, Md. Abdul Masud
arXiv AI
Jul 23

SubQuad: Near-Quadratic-Free Structure Inference with Distribution-Balanced Objectives in Adaptive Receptor framework

arXiv:2602. 17330v5 Announce Type: replace-cross Abstract: Comparative analysis of adaptive immune repertoires at population scale is hampered by two practical bottlenecks: the near-quadratic cost of pairwise affinity evaluations and dataset imbalances that obscure clinically important minority clonotypes.

By Rong Fu, Zijian Zhang, Kun Liu, Jiekai Wu, Xianda Li, Simon Fong
arXiv Machine Learning
Jun 4

New Benchmarking Shows Limited Generalization Power of TCR Antigenic Epitope Prediction Models

arXiv:2606. 04994v1 Announce Type: new Abstract: Accurate computational prediction of T cell receptor (TCR) antigen specificity would transform the study of T cell biology and enable scalable immune engineering, yet existing models lack sufficient sensitivity and specificity for broad applications.

By Yiming Liao, Yiheng Li, Ning Jiang, Bo Li, Keke Chen