arXiv AI
Jul 9
SpaCellAgent: A Self-Evolving LLM-Based Multi-Agent Framework for Trajectory Analysis
arXiv:2607. 07467v1 Announce Type: new Abstract: Spatial and Single-cell transcriptomics are transformative in deciphering cellular dynamics.
SpaCellAgent: A Self-Evolving LLM-Based Multi-Agent Framework for Trajectory Analysis
Spatial and Single-cell transcriptomics are transformative in deciphering cellular dynamics. As the fundamental paradigm for reconstructing cell developmental paths, trajectory inference (TI) is critical.
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arXiv AI
Jun 24
SP-Mind: An Autonomous Reasoning Agent for Spatial Proteomics Analysis
arXiv:2606. 24235v1 Announce Type: new Abstract: Spatial proteomics enables single-cell-resolution characterization of protein expression within tissue architecture, playing a critical role in understanding tumor microenvironments and guiding precision medicine.
Hugging Face Trending Papers
Jul 29
SciDataSailor: Deep Scientific Data Exploring
Scientific datasets are commonly organized as hierarchical repositories containing heterogeneous and interdependent files, making their inspection, integration, and analysis labor-intensive and reliant on domain expertise. Although large language model (LLM) agents have advanced substantially in planning, reasoning, and tool use, existing research has largely overlooked their ability to interact with real scientific data assets through executable environments.
arXiv AI
Aug 7
BioAgent Bench: An AI Agent Evaluation Suite for Bioinformatics
arXiv:2601. 21800v4 Announce Type: replace Abstract: We introduce BioAgent Bench, an evaluation suite designed for measuring the performance and robustness of AI agents in common bioinformatics tasks.
arXiv AI
1d ago
Path2ST: Hierarchical Cell-Tissue Grounded Cross-Modal Translation for Spatial Transcriptomics
arXiv:2608. 14710v1 Announce Type: cross Abstract: Predicting spatial gene expression from hematoxylin and eosin (H\&E)-stained images offers a cost-effective alternative to spatial transcriptomics (ST).
arXiv Machine Learning
Jul 30
DREvo: Distilling Recalibrated Historical Experience for Harness Self-Evolution
arXiv:2607. 26722v1 Announce Type: cross Abstract: Harness plays a critical role in large language model agent performance, and building a high-performing harness requires substantial expert effort.
arXiv AI
Jul 1
Agentic-Ideation: Sample Efficient Agentic Trajectories Synthesis for Scientific Ideation Agents
arXiv:2606. 31229v1 Announce Type: new Abstract: Ideation plays a pivotal role in scientific discovery.
arXiv AI
Jul 21
Autonomous mechanistic discovery of colorectal cancer vulnerabilities via multi-scale AI swarms
arXiv:2607. 16262v1 Announce Type: cross Abstract: The acceleration of automated scientific discovery has been fundamentally bottlenecked by the epistemic gap between the semantic reasoning of large language models (LLMs) and the deterministic physics of mammalian biology.
arXiv AI
Jul 9
From Atomic Actions to Standard Operating Procedures: Iterative Tool Optimization for Self-Evolving LLM Agents
arXiv:2607. 07321v1 Announce Type: new Abstract: Tool utilization enables Large Language Model (LLM) agents to interact with the real world and resolve complex tasks.
arXiv AI
Jun 3
Co-evolving Agent Architectures and Interpretable Reasoning for Automated Optimization
arXiv:2604. 17708v2 Announce Type: replace Abstract: Automating operations research (OR) with large language models (LLMs) remains limited by hand-crafted reasoning--execution workflows.
arXiv AI
Jun 6
MLEvolve: A Self-Evolving Framework for Automated Machine Learning Algorithm Discovery
arXiv:2606. 06473v1 Announce Type: new Abstract: Large language model (LLM) agents are increasingly applied to long-horizon tasks such as scientific discovery and machine learning engineering (MLE), where sustained self-evolution becomes a key capability.
Hugging Face Trending Papers
Aug 3
GISAgentBench: A Practitioner-Sourced Benchmark for Evaluating LLM Agents on GIS Tasks
Geographic Information System (GIS) professionals rely on multi-step spatial analysis workflows to support decision-making in urban planning, disaster response, and environmental monitoring. The process is tedious, time-consuming, and error-prone.