We present string2string Studio, an interactive in-browser platform for string-to-string analysis across natural language processing, computational biology, and the digital humanities. The system integrates six main modules (alignment, distance, similarity, search, generation metrics, and BLAST homology search), operating at character, word, token, line, and residue levels.
arXiv:2411. 06024v1 Announce Type: cross Abstract: The exponential growth in protein-related databases and scientific literature, combined with increasing demands for efficient biological information retrieval, has created an urgent need for unified and accessible search methods in protein engineering research.
arXiv:2607. 05443v1 Announce Type: cross Abstract: Scientists increasingly rely on open-source tools to support their research workflows, yet discovering relevant software among over 600 million GitHub repositories remains challenging.
arXiv:2607. 19104v1 Announce Type: cross Abstract: Large language models (LLMs) excel at general-purpose code generation, yet how well they handle scientific code remains an open question.
arXiv:2608. 07038v1 Announce Type: cross Abstract: Human-Oriented Binary Reverse Engineering (HOBRE) aims to transform decompiled pseudocode into a more human-friendly representation, thereby reducing the cognitive burden of reverse analysis and improving efficiency.
arXiv:2602. 10908v2 Announce Type: replace-cross Abstract: We present SoftMatcha 2, an ultra-fast and flexible search algorithm that enables search over trillion-scale natural language corpora in under 0.
arXiv:2602. 02320v4 Announce Type: replace-cross Abstract: Molecular function is largely determined by structure.
arXiv:2607. 26070v1 Announce Type: cross Abstract: Large language model (LLM)-based agentic search systems are often evaluated as if the underlying LLM were the only component that matters, yet their measured performance also depends on the surrounding search environment: the Wikipedia snapshot, preprocessing pipeline, chunking policy, retrieval backend, tool schema, observation format, and answer submission rule.
arXiv:2607. 09452v1 Announce Type: cross Abstract: We present a practical pipeline for recovering source code from stripped binary functions by combining reverse engineering, anchor-based source code retrieval, and large language model reasoning.
arXiv:2606. 14885v1 Announce Type: new Abstract: Agentic search over large corpora relies on retriever-mediated interfaces (e.
arXiv:2608. 07530v1 Announce Type: new Abstract: SHACL is a core technology for validating the conformance of RDF knowledge graphs (KGs).
arXiv:2607. 10771v1 Announce Type: cross Abstract: Matching dependency is a generalization of the functional dependency concept, which allows users to apply custom similarity functions for matching individual attributes.
arXiv:2607. 26766v1 Announce Type: cross Abstract: Code search in large-scale ecosystems is often hindered by the lexical gap between user queries and implementation details, alongside the trade-off between the low latency of traditional Information Retrieval (IR) and the precision of Deep Learning (DL).