arXiv AI By Mianzhi Liu, Fan Xiao, Zhiliang Yu, Huayang Huang, Yuke Li, Yi Yang, Wenbo Liu, Yu Wu

RetroMPA: A Molecular Property-Aware Auxiliary Framework for Enhancing Retrosynthesis Prediction

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arXiv:2608. 16111v1 Announce Type: cross Abstract: Retrosynthesis is a cornerstone of drug discovery and organic synthesis.

Machine-generated by The Flow from the publisher's headline and feed description — not written or checked by a human. The full article lives at arXiv AI.

arXiv AI
Jun 2

When Single Answer Is Not Enough: Rethinking Single-Step Retrosynthesis Benchmarks for LLMs

arXiv:2602. 03554v2 Announce Type: replace-cross Abstract: Recent progress has expanded the use of large language models (LLMs) in drug discovery, including synthesis planning.

By Bogdan Zagribelnyy, Ivan Ilin, Maksim Kuznetsov, Nikita Bondarev, Mathieu Reymond, Roman Schutski, Thomas MacDougall, Rim Shayakhmetov, Zulfat Miftakhutdinov, Mikolaj Mizera, Vladimir Aladinskiy, Alex Aliper, Alex Zhavoronkov
arXiv Machine Learning
Aug 12

Order Matters in Retrosynthesis: Structure-aware Generation via Reaction-Center-Guided Discrete Flow Matching

arXiv:2602. 13136v2 Announce Type: replace Abstract: Template-free retrosynthesis methods treat the task as black-box sequence generation, limiting learning efficiency, while semi-template approaches rely on rigid reaction libraries that constrain generalization.

By Chenguang Wang, Zihan Zhou, Lei Bai, Tianshu Yu
arXiv AI
Aug 20

Training Chemical Plausibility-Aware Large Language Models for Single-Step Retrosynthesis

The paper introduces Top‑K prompting as a training and inference strategy to better capture the diverse, plausible predictions inherent in single‑step retrosynthesis. Using an ultra‑large dataset (CREED‑CCV‑2+USPTO‑XL) of ~45.6 million verified reactions, the authors train the Chemistry Constraint‑Consistent Language Model (C3LM). With fine‑tuning that incorporates ChemCensor‑based and novelty‑oriented rewards, C3LM achieves state‑of‑the‑art performance on the OOD URSA‑expert‑2026 benchmark and demonstrates complementary reaction space exploration compared to conventional models, suggesting benefits for ensemble‑based retrosynthesis systems.

By Bogdan Zagribelnyy, Ivan Ilin, Nikita Bondarev, Maksim Kuznetsov, Mathieu Reymond, Vladimir Aladinskiy, Alex Aliper, Alex Zhavoronkov