arXiv:2606. 06295v1 Announce Type: new Abstract: Path sampling methods generate ensembles of reactive trajectories connecting metastable states, but extracting mechanistic insight from these data remains nontrivial.
By Rishal Aggarwal, David Ryan Koes, Nicholas M. Boffi, Eric Vanden-Eijnden
arXiv:2608. 07648v1 Announce Type: cross Abstract: Sampling high-dimensional probability distributions is a central task in scientific computing, with applications ranging from Bayesian inference to statistical physics and molecular simulation.
By Marylou Gabri\'e
arXiv:2604. 13213v2 Announce Type: replace-cross Abstract: Rare events such as conformational changes in biomolecules, phase transitions, and chemical reactions are central to the behavior of many physical systems, yet they are extremely difficult to study computationally because unbiased simulations seldom produce them.
By Yuanqi Du, Jiajun He, Dinghuai Zhang, Eric Vanden-Eijnden, Carles Domingo-Enrich
arXiv:2605. 00337v2 Announce Type: replace Abstract: Sampling the distribution of collective variables (CVs) and estimating the associated free energy surface are crucial problems in statistical physics, as they underpin a better understanding of chemical reactions and conformational transitions.
By Zichen Liu, Tiejun Li
arXiv:2608. 14076v1 Announce Type: cross Abstract: Transition-state (TS) structures define the energetic barriers and mechanistic pathways of elementary chemical reactions, yet their identification remains computationally demanding because conventional saddle-point searches require expensive quantum-mechanical calculations.
By Kaipeng Zeng, Wenxi Zhai, Shengrui Xu, Jie Zhao, Bowen Li, Shiyue Wang, Junchi Yan, Tong Zhu
arXiv:2607. 05252v1 Announce Type: new Abstract: Simulation-Based Inference (SBI) is critical for scientific discovery, with generative models offering a promising path toward efficient inference.
By Weichen Qin, Yufan Xie, Peihao Wang, Chia-Jui Chou, Minghui Du, Peng Xu, Ziren Luo, Yi Yang, Jingyi Yu, Bo Liang, Jiakai Zhang