arXiv Machine Learning By Luca Thale-Bombien, Jan Ewald, Ralf K\"onig, Aaron Klein

BBOmix: A Tabular Benchmark for Hyperparameter Optimization of Unsupervised Biological Representation Learning

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arXiv:2606. 05139v1 Announce Type: new Abstract: The rapid advancement of high-throughput sequencing has led to large, high-dimensional omics datasets.

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arXiv AI
Aug 10

Beyond Foundation Models: Dimension-Aware Neural Architecture Search with Small-Data Representation Models for Cryocooler Lifetime Prediction

arXiv:2608. 06993v1 Announce Type: cross Abstract: Large-scale pretrained time-series models achieve strong results through large-scale pretraining and task-agnostic representation learning, but they rely on abundant, diverse data that industrial and scientific domains often lack.

By Gregor Molan (Comtrade 360 d.o.o., Letali\v{s}ka cesta 29b, Ljubljana, 1000, Slovenia), Grafika Jati (Comtrade 360 d.o.o., Letali\v{s}ka cesta 29b, Ljubljana, 1000, Slovenia), Francesco Barchi (Alma Mater Studiorum - Universita di Bologna, Department of Electrical, Electronic, and Information Engineering), Andrea Acquaviva (Alma Mater Studiorum - Universita di Bologna, Department of Electrical, Electronic, and Information Engineering), Alja\v{z} Osterman (LE-Tehnika d.o.o., \v{S}uceva 27, Kranj, 4000, Slovenia), Martin Molan (Comtrade AI GmbH, Grafenauweg 8, Zug, 6300, Switzerland)
arXiv AI
Aug 11

Biologically Informed Representation Learning for Robust Cross-Center Generalization of MALDI-TOF Mass Spectrometry

arXiv:2608. 08182v1 Announce Type: cross Abstract: Machine learning models for MALDI-TOF mass spectrometry have shown considerable promise for clinical microbiology tasks such as microbial identification and antimicrobial resistance prediction.

By Alejandro L. Garc\'ia-Navarro, Carlos Sevilla-Salcedo, Bel\'en Rodr\'iguez-S\'anchez, Vanessa G\'omez-Verdejo
arXiv AI
Jul 23

SubQuad: Near-Quadratic-Free Structure Inference with Distribution-Balanced Objectives in Adaptive Receptor framework

arXiv:2602. 17330v5 Announce Type: replace-cross Abstract: Comparative analysis of adaptive immune repertoires at population scale is hampered by two practical bottlenecks: the near-quadratic cost of pairwise affinity evaluations and dataset imbalances that obscure clinically important minority clonotypes.

By Rong Fu, Zijian Zhang, Kun Liu, Jiekai Wu, Xianda Li, Simon Fong