arXiv AI

GPTKB 2.0: Browsing, Querying, and Auditing a Disambiguated LLM-Derived Knowledge Base

arXiv:2608. 06992v1 Announce Type: cross Abstract: We present a web demo for exploring a large-scale disambiguated knowledge base (KB) materialized from a large language model (LLM).

arXiv AI
Sep 3

Direct Construction of Disambiguated Knowledge Bases from Large Language Models

The paper introduces GPTKB 2.0, a method for building disambiguated knowledge bases directly from large language models. It addresses the lack of native entity representation in LLMs by performing on‑the‑fly disambiguation of entities, relations, and classes, achieving a million‑scale KB with over 1 million disambiguated entities and 38.4 million triples. The authors analyze trade‑offs among accuracy, scale, and cost, and release the system at https://gptkb.org/.

By Yujia Hu, Tuan-Phong Nguyen, Simon Razniewski
arXiv Computation and Language
Sep 23

BELXTR: Biomedical Entity Linking via Contextualized Token Retrieval

BELXTR is a new biomedical entity linking model that uses a multi‑vector (late interaction) architecture to preserve token‑level matching information, unlike traditional embedding‑based approaches that compress mentions into a single vector. By extending the XTR model with a task‑specific training objective and active query expansion, BELXTR achieves state‑of‑the‑art performance on half of ten evaluated corpora, with an average 5‑percentage‑point gain in recall@1. The model shows especially strong results on cross‑species gene disambiguation, outperforming an LLM‑powered retrieve‑and‑rerank pipeline and approaching a specialized rule‑based system.

By Samuele Garda, Ulf Leser
arXiv Machine Learning
Sep 11

Enabling Knowledge Graph Understanding at Scale with the EXplore Your Graphs ENgine (EXYGEN)

The paper introduces EXYGEN, a framework that enables conversational access to large knowledge graphs by combining VoID descriptions, ShEx schemas, retrieved triples, and example question‑query pairs in a retrieval‑augmented generation pipeline. On the SciQA benchmark, this approach achieves an exact‑match score of 0.419 without fine‑tuning any large language model, and shows that larger general‑purpose LLMs can outperform smaller code‑specialized ones when provided sufficient context. To scale metadata generation for very large KGs, the authors propose a predicate‑coverage‑aware parallel graph sampling strategy that preserves structural diversity, reduces runtime by over 80× on OpenCitations Meta and GESIS, and is the only tractable method for obtaining complete metadata on ORKG.

By Harshdeep Singh, Yurui Zhu, Giovanni Colavizza, Matteo Romanello
arXiv Computation and Language
Aug 31

Select, Don't Train: The Benefits of Modular Entity Disambiguation with LLM-Based Selection

The paper investigates modular entity disambiguation by separating candidate retrieval from entity selection. It compares sparse retrieval (BM25), Web KB search, and a dense retriever, all paired with large language model selectors. Results show that a training‑free BM25 retriever combined with an LLM selector achieves state‑of‑the‑art performance on the ZELDA benchmark, and the modular approach enables abstention when retrieval fails.

By Fina Polat, Daniel Daza, Pengyu Zhang, Klim Zaporojets, Paul Groth
arXiv AI
Sep 25

SPARQL-LLM: Real-Time SPARQL Query Generation from Natural Language Questions

SPARQL-LLM is an open‑source, triplestore‑agnostic system that generates SPARQL queries from natural language using lightweight metadata and dedicated components for indexing, prompt building, and execution. It achieves up to 59 % higher F1 scores than the next best system on a multilingual challenge and on bioinformatics knowledge graphs, while being up to 27 × faster and costing no more than $0.01 per question. The project is publicly available on GitHub and is already deployed on real‑world decentralized knowledge graphs such as expasy.org/chat.

By Panayiotis Smeros, Vincent Emonet, Ruijie Wang, Ana-Claudia Sima, Tarcisio Mendes de Farias