arXiv:2604. 16205v2 Announce Type: replace-cross Abstract: Computational X-ray absorption near-edge structure (XANES) is widely used to interpret local coordination environments, oxidation states, and electronic structure in chemically complex systems.
arXiv:2602. 17902v2 Announce Type: replace Abstract: Large language models (LLMs) can plan scientific workflows and generate code, but these capabilities do not specify how scientific state is validated, transferred and recorded across heterogeneous computational and experimental operations.
arXiv:2608. 04942v1 Announce Type: cross Abstract: CheMLFlow is an open-source platform for building and executing end-to-end, high-throughput, and agentic workflows for scientific and technological applications.
El Agente Potente is an agentic system that integrates typed execution graphs and a coding mode to facilitate machine‑learning interatomic potential (MLIP) driven atomistic simulations. Typed execution graphs offer structured, provenance‑aware workflows where large language models handle planning and routing while deterministic Python code performs scientific computation and validation. The coding agent builds customized workflows for tasks needing procedural flexibility, invoking existing Potente functions for supported calculations. The system is demonstrated across materials discovery, energy‑landscape exploration, adsorption, and catalytic reaction workflows, with benchmarks on reproducibility and LLM token cost.
arXiv:2606. 03660v1 Announce Type: new Abstract: Large language models are increasingly used as chemistry assistants, yet most chemistry benchmarks still score only final answers.
CheMLFlow is an open-source platform for building and executing end-to-end, high-throughput, and agentic workflows for scientific and technological applications. CheMLFlow targets a common bottleneck in scientific machine learning development, where researchers often need to assemble data acquisition, curation, representation, model training, validation, screening, interpretation, and reporting into a reproducible pipeline, even when their primary research contribution concerns only one stage.
MolDesignBench is a new benchmark for evaluating large language model (LLM)-based agents in scenario‑grounded molecular design. It contains 2,000 generation and optimization tasks that blend implicit narrative requirements with explicit property and functional‑group constraints, including infeasible cases, and require the use of 17 specialized chemistry tools. Experiments with leading LLMs show low success rates (best ~43%) and highlight failures in implicit‑constraint reasoning, infeasibility detection, and tool usage, underscoring the benchmark’s role in identifying key bottlenecks for future research.
arXiv:2608. 06961v1 Announce Type: new Abstract: Early-stage molecular design is an iterative process, not just a task of generating molecules.
arXiv:2607. 10559v1 Announce Type: new Abstract: Metal-organic frameworks (MOFs) offer a highly modular platform for adsorptive gas separation, yet their vast reticular design space makes inverse design difficult under simultaneous constraints of chemical validity, separation performance, and structural diversity.
AutoXRD is an autonomous large language model (LLM) agent framework designed to automate powder X-ray diffraction (XRD) analysis by structuring the process as stepwise refinement, grounding actions in observed evidence, and applying deterministic crystallographic and physical checks. The authors introduce XRDBench, comprising two tracks: XRDBench-QA with 100 diagnostic tasks focused on scientific reasoning, and XRDBench-E2E with 34 executable workflows that test full analysis capabilities, including file inspection, software execution, iterative refinement, evidence preservation, and reporting. Evaluation of ten recent LLMs on 1,340 model–task runs shows average scores of 57.8, with GPT‑5.6 Sol achieving the highest overall score of 81.1; the study also identifies key failure modes such as coupled‑parameter control and quantitative reasoning, highlighting areas for future improvement.
arXiv:2606. 29459v1 Announce Type: cross Abstract: Inverse design of metal-organic frameworks (MOFs) requires searching a combinatorially vast space where property labels are expensive and most machine-learning models reveal little about why a structure succeeds.
The paper introduces Tool Primitives, a design that replaces rigid API schemas with natural language interfaces for tool calling, enabling seamless inter-tool communication. It builds ToolFace, a repository of over 25,000 functions that LLMs can dynamically retrieve, and HEART, a harness engineering framework that orchestrates tool use with planning, routing, and verification. Experiments show HEART outperforms fine‑tuned models and leading commercial LLMs while cutting API costs by up to 85%.
arXiv:2607. 24766v1 Announce Type: new Abstract: Large language models (LLMs) can generate individual charts, but coordinated multi-view visualizations (CMVs), where views share data flows and cross-view interactions, remain out of reach.